Dan Wagner, PhD

Assistant Professor
Ob/Gyn, Reproductive Sciences
+1 415 502-8543

Dan Wagner, PhD studies the molecular mechanisms of tissue patterning and error correction in vertebrate embryos using high-throughput single-cell profiling, in vivo imaging, and functional genomics. Visit the Wagner lab website.

Publications: 

Neural plate pre-patterning enables specification of intermediate neural progenitors in the spinal cord.

bioRxiv : the preprint server for biology

Nandagopal S, Cha A, Jia BZ, Liao H, Comenho C, Lahav G, Wagner DE, Tsai TY, Megason SG

Pluripotency of a founding field: rebranding developmental biology.

Development (Cambridge, England)

Rogers CD, Amemiya C, Arur S, Babonis L, Barresi M, Bartlett M, Behringer R, Benham-Pyle B, Bergmann D, Blackman B, Brown CT, Browne B, Camacho J, Chabu CY, Chow I, Cleaver O, Cool J, Dennis MY, Dickinson AJ, Di Talia S, Frank M, Gillmor S, Haag ES, Hariharan I, Harland R, Husbands A, Jerome-Majewska L, Koenig K, Labonne C, Layden M, Lowe C, Mani M, Martik M, McKown K, Moens C, Mosimann C, Onyenedum J, Reed R, Rivera A, Rokhsar D, Royer L, Rutaganira F, Shahan R, Sinha N, Swalla B, Van Norman JM, Wagner DE, Wikramanayake A, Zebell S, Brady SM

Graded BMP signaling within intestinal crypt architecture directs self-organization of the Wnt-secreting stem cell niche.

Cell stem cell

Kraiczy J, McCarthy N, Malagola E, Tie G, Madha S, Boffelli D, Wagner DE, Wang TC, Shivdasani RA

In vitro characterization of the human segmentation clock.

Nature

Diaz-Cuadros M, Wagner DE, Budjan C, Hubaud A, Tarazona OA, Donelly S, Michaut A, Al Tanoury Z, Yoshioka-Kobayashi K, Niino Y, Kageyama R, Miyawaki A, Touboul J, Pourquié O

The emergence of transcriptional identity in somatosensory neurons.

Nature

Sharma N, Flaherty K, Lezgiyeva K, Wagner DE, Klein AM, Ginty DD

Single-cell mapping of gene expression landscapes and lineage in the zebrafish embryo.

Science (New York, N.Y.)

Wagner DE, Weinreb C, Collins ZM, Briggs JA, Megason SG, Klein AM

The dynamics of gene expression in vertebrate embryogenesis at single-cell resolution.

Science (New York, N.Y.)

Briggs JA, Weinreb C, Wagner DE, Megason S, Peshkin L, Kirschner MW, Klein AM

Simultaneous single-cell profiling of lineages and cell types in the vertebrate brain.

Nature biotechnology

Raj B, Wagner DE, McKenna A, Pandey S, Klein AM, Shendure J, Gagnon JA, Schier AF

Clonal Analysis of Planarian Stem Cells by Subtotal Irradiation and Single-Cell Transplantation.

Methods in molecular biology (Clifton, N.J.)

Wang IE, Wagner DE, Reddien PW

Genetic screening enters the single-cell era.

Nature methods

Wagner DE, Klein AM

teashirt is required for head-versus-tail regeneration polarity in planarians.

Development (Cambridge, England)

Owen JH, Wagner DE, Chen CC, Petersen CP, Reddien PW

Muscle cells provide instructions for planarian regeneration.

Cell reports

Witchley JN, Mayer M, Wagner DE, Owen JH, Reddien PW

Toward the development of peptide nanofilaments and nanoropes as smart materials.

Proceedings of the National Academy of Sciences of the United States of America

Wagner DE, Phillips CL, Ali WM, Nybakken GE, Crawford ED, Schwab AD, Smith WF, Fairman R